ahcore

• ahcore package
  • Subpackages
    • ahcore.callbacks package
      • Submodules
      • ahcore.callbacks.h5_callback module
      • ahcore.callbacks.tiff_callback module
      • ahcore.callbacks.wsi_metric_callback module
      • Module contents
    • ahcore.cli package
      • Submodules
      • ahcore.cli.data module
      • ahcore.cli.tiling module
      • Module contents
    • ahcore.data package
      • Submodules
      • ahcore.data.dataset module
      • ahcore.data.samplers module
      • Module contents
    • ahcore.hydra_plugins package
      • Submodules
      • ahcore.hydra_plugins.additional_configs module
      • Module contents
    • ahcore.metrics package
      • Submodules
      • ahcore.metrics.metrics module
      • Module contents
    • ahcore.models package
      • Module contents
    • ahcore.transforms package
      • Submodules
      • ahcore.transforms.augmentations module
      • ahcore.transforms.pre_transforms module
      • Module contents
    • ahcore.utils package
      • Submodules
      • ahcore.utils.callbacks module
      • ahcore.utils.data module
      • ahcore.utils.database_models module
      • ahcore.utils.io module
      • ahcore.utils.manifest module
      • ahcore.utils.rois module
      • ahcore.utils.types module
      • Module contents
  • Submodules
  • ahcore.entrypoints module
    • create_datamodule()
    • inference()
    • train()
  • ahcore.exceptions module
    • ConfigurationError
    • RecordNotFoundError
  • ahcore.lit_module module
    • AhCoreLightningModule
      • AhCoreLightningModule.RELEVANT_KEYS
      • AhCoreLightningModule.configure_optimizers()
      • AhCoreLightningModule.data_description
      • AhCoreLightningModule.do_step()
      • AhCoreLightningModule.forward()
      • AhCoreLightningModule.name
      • AhCoreLightningModule.predict_step()
      • AhCoreLightningModule.training_step()
      • AhCoreLightningModule.validation_step()
      • AhCoreLightningModule.wsi_metrics
  • ahcore.losses module
    • LossFactory
      • LossFactory.forward()
    • cross_entropy()
    • soft_dice()
  • ahcore.readers module
    • H5FileImageReader
      • H5FileImageReader.close()
      • H5FileImageReader.from_file_path()
      • H5FileImageReader.get_mpp()
      • H5FileImageReader.get_scaling()
      • H5FileImageReader.mpp
      • H5FileImageReader.read_region()
      • H5FileImageReader.read_region_raw()
      • H5FileImageReader.size
    • StitchingMode
      • StitchingMode.AVERAGE
      • StitchingMode.CROP
      • StitchingMode.MAXIMUM
    • crop_to_bbox()
  • ahcore.writers module
    • H5FileImageWriter
      • H5FileImageWriter.add_associated_images()
      • H5FileImageWriter.adjust_batch_precision()
      • H5FileImageWriter.consume()
      • H5FileImageWriter.init_writer()
    • H5TileFeatureWriter
      • H5TileFeatureWriter.consume_features()
      • H5TileFeatureWriter.init_writer()
    • decode_array_to_pil()
  • Module contents